=== Starting job 2026-10-20T19:20:57.412Z full update: 302 of 302 ===
== starting git pull ==
OUT> Already up to date.
== git pull successful ==
Starting transformation
{
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}

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starting gg2rdf on document id: B33CB310FFC13E1EFF51FAF0FC396433
gg2rdf successful
starting gg2rdf on document id: B33CB310FF973E4DFF51F920FBEF66F3
gg2rdf successful
starting gg2rdf on document id: B33CB310FFC73E1EFF51FE47FC5B6338
gg2rdf successful
starting gg2rdf on document id: B32E230457169247AA1101EF46F898DA
gg2rdf successful
starting gg2rdf on document id: B32EE3D4F3FD537FB1A4DE46E34EE9E4
gg2rdf successful
starting gg2rdf on document id: B32E7C0B0FA25104B0544296EEEA8838
gg2rdf successful
starting gg2rdf on document id: B32E73A9F02557D79EE8804A4286DAD2
Warning: Could not add treatment taxon because the rank attribute is missing
gg2rdf successful with warnings
starting gg2rdf on document id: B32EEB94865C770620F2726A16B5C3D7
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD0FFFE7FE2C63C5FE3BFB57
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD12FFE5FE716004FC18FE95
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD05FFE8FE2A67C9FE5BFDF7
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD07FFEFFE326044FE68FA97
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD1BFFFFFDCD634FFBBBFABA
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD15FFF8FE1E67D8FBACFDD7
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD0DFFE0FE196684FE42FD77
gg2rdf successful
starting gg2rdf on document id: B32E87D9AD0AFFEDFE6D60EEFE98FE17
gg2rdf successful
starting gg2rdf on document id: B3B3D6BAB56AF85580CE25D09EC79902
gg2rdf successful
starting gg2rdf on document id: B3B32BA7880559188FB74FDA39BD2C04
gg2rdf successful
starting gg2rdf on document id: B3B319AB434B8F6BD8DDD1824DDE350F
gg2rdf successful
starting gg2rdf on document id: B3B355F83DF8D57BAE26B06D9FB5ED8D
gg2rdf successful with warnings
starting gg2rdf on document id: B3B31C37E7E227EBDAB958C2189D8EE1
gg2rdf successful
starting gg2rdf on document id: B3B313D29DF8566930E58CE2FAE9FC2A
gg2rdf successful with warnings
Skipping .git/HEAD (not *.xml or does not exist in treatments-xml)
Skipping .git/logs/HEAD (not *.xml or does not exist in treatments-xml)
Skipping .git/logs/refs/remotes/origin/HEAD (not *.xml or does not exist in treatments-xml)
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Skipping .git/objects/6d/f14ededd6270dcb4da483295e094a6c3626478 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/baba5fe69969cdfb665c8020d46451a61defc7 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/2ba808303c6c60bd0d1e85ca8740f266a88869 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/6d18758515c8f2a5f10c7289e235cd6ad31b13 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/d5e893cdce2cccf45fcf01fc9f29e374841211 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/222b7b6d7b659095a6622d759f75ece2abc028 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/ce823f06865a8c5e5d25df061a9805ffba2163 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/5feef12ee45cc45327c0b7543a3ddced6b27a8 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/ccbd72fe0656ecab29f8ed203b11c2837bd78c (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/db114761232556213113bc2b5d3966b76a2975 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/e57da657a4208d9e15136a251bcfe54a28e759 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/cbe34fb67571b2ffe1928b8c7c4489f71011be (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/6d/d3e9c4617656f98451d471096282cb441765d7 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/458312f1f352a0491822672bc5d22db3b09a7b (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/916ee5740e3193a1a41f2a7f3210575760e0b9 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/0641dacfaf69a6a0772fb9c32d2cf7655ea74c (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/6c277316d92870f6a13b7bc623d28108588823 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/b4a14349ff7725b4682f5a97254b1f8e994242 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/17522e7e69d5f8f9b95bff6c14ca45725c6938 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/45b2f1ff32b5b506b16eeedd85a3a3de26f5d5 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/d77458fda0b83ebe3c0244a632f47255683745 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/45c7ead398cbc8fcb19d5fb6222053ec617ed1 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/8715414aca4c890cb94d09e4fd878367ee592b (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/688b3b456332eea9a0ad5fc7ac054c55d03fd5 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/4b/177192188e413210aa7e988bfb2f5ab8d3ca54 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/c1/3be3dadf31180fdda5134594cb21e338dfd185 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/c1/03674c30f87c53c83323a4222954e97cb2c271 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/c1/c4afaaf655fe754e98d073c5bde5f36abe38b6 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/c1/3e6faf6477e46901f716222267eb5af3833858 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/0a9fbc31752b9772bb79c199694f4b2786b956 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/593767fff6f77c757beea7dab1e1b4950c2355 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/f1394a41daa8457508a10b148659b5d4ad5893 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/01564bac95f5486c73150e13579d0eb1c6b9cc (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/b1d7fbb53053aa1cdc3bed7c874aa4fc4d19b9 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/b71817afc6f44be5aa421ee58a58e8b70dc932 (not *.xml or does not exist in treatments-xml)
Skipping .git/objects/bc/d05013cac43000e50b4b9edc59600a5c05e07f (not *.xml or does not exist in treatments-xml)
Skipping .git/refs/remotes/origin/HEAD (not *.xml or does not exist in treatments-xml)
Skipping .git/refs/remotes/origin/main (not *.xml or does not exist in treatments-xml)
Skipping .git/refs/heads/main (not *.xml or does not exist in treatments-xml)
Skipping .git/info/refs (not *.xml or does not exist in treatments-xml)
Skipping .git/info/exclude (not *.xml or does not exist in treatments-xml)
Skipping .git/config (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-push.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/push-to-checkout.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-commit.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/post-update.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/fsmonitor-watchman.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/prepare-commit-msg.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/update.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/commit-msg.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-merge-commit.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-applypatch.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-rebase.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/pre-receive.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/hooks/applypatch-msg.sample (not *.xml or does not exist in treatments-xml)
Skipping .git/description (not *.xml or does not exist in treatments-xml)
Skipping .git/FETCH_HEAD (not *.xml or does not exist in treatments-xml)
Skipping .git/packed-refs (not *.xml or does not exist in treatments-xml)
Skipping .git/ORIG_HEAD (not *.xml or does not exist in treatments-xml)
Skipping .git/index (not *.xml or does not exist in treatments-xml)
Skipping paaa-architecture.drawio (not *.xml or does not exist in treatments-xml)
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-rdf
ERR>    65a24c4a11c8..0d8ed65adb54  main       -> origin/main
OUT> Already up to date.
== git pull successful ==
== git commit ==
OUT> [main 3af916c51f68] GG2RDF 2026-10-20T19:20:57.412Z full update: 302 of 302 (plazi/treatments-xml)
OUT>  86 files changed, 1959 insertions(+)
Found 266 orphaned ttl files of 903345
Removing orphan data/D2/DD/24/D2DD241F372D5877241EE3B646FBF4B1.ttl
Removing orphan data/D6/5A/76/D65A767CA179FFF07AF9FD95FF14FB8F.ttl
Removing orphan data/D6/5A/76/D65A767CA179FFE5793BFDB7FC73FE27.ttl
Removing orphan data/3E/38/0C/3E380C57FFDB4A7227ACB3DAFA43E7ED.ttl
Removing orphan data/3E/38/0C/3E380C57FFD14A6927ACB435FA43E1B9.ttl
Removing orphan data/5E/09/87/5E0987A59667334344DE56375F9EFA51.ttl
Removing orphan data/5E/09/87/5E0987A596643345447151985C84FAF5.ttl
Removing orphan data/5E/09/87/5E0987A596623345465A51C258FDFAF2.ttl
Removing orphan data/F3/1D/87/F31D87FD1C31FFDF232AF399FB1D640B.ttl
Removing orphan data/F3/1D/87/F31D87FD1C34FFD921AEF46CFC7E64A8.ttl
Removing orphan data/FB/B3/C4/FBB3C4615E0D46E11A9760B01983583D.ttl
Removing orphan data/FD/5B/87/FD5B87CAFFAF0C4AF0B66D1CA524FB80.ttl
Removing orphan data/BE/08/07/BE08073AFFE3FFB7FF1C459CFB10F89A.ttl
Removing orphan data/BE/08/07/BE08073AFFEAFFBEFF1C40C9FB21FE35.ttl
Removing orphan data/BE/08/07/BE08073AFFFEFFAAFF1C4716FBF1F80F.ttl
Removing orphan data/BE/35/C7/BE35C766D42123495E62F9856E18F8C0.ttl
Removing orphan data/1E/30/E2/1E30E2753426FF97E2422E757F4A86AB.ttl
Removing orphan data/96/4B/87/964B87EDFFD73E29CD934655FEF4FCBC.ttl
Removing orphan data/27/64/BD/2764BD61A91BFFE8FF32F931FDFCF88E.ttl
Removing orphan data/08/25/38/08253846FF90BC1AFF333627FA1F7381.ttl
Removing orphan data/08/25/38/08253846FF97BC1CFC9335F9FD0F736A.ttl
Removing orphan data/08/25/38/08253846FF91BC1BFF333147FD7271A1.ttl
Removing orphan data/08/25/38/08253846FF96BC1FFF33334CFD5274F7.ttl
Removing orphan data/08/25/38/08253846FF90BC1AFF3330DCFDB37337.ttl
Removing orphan data/08/25/38/08253846FF93BC19FC93315CFC14762F.ttl
Removing orphan data/FE/65/24/FE652430667DFF95B7D6CEBC876DF813.ttl
Removing orphan data/FE/65/24/FE652430667DFF95B7C0C8AF876FFB2A.ttl
Removing orphan data/FE/65/24/FE652430667DFF95B6EECB3C873EFD5B.ttl
Removing orphan data/FE/65/24/FE652430667CFF98B774C99F876DFDC8.ttl
Removing orphan data/F2/75/A6/F275A6752C5E4023FD89A52CFD876AD3.ttl
Removing orphan data/F2/16/87/F21687A65676FFF0FDB9FE5DFAE72081.ttl
Removing orphan data/C8/41/87/C84187F5117CFF9FE191A140265E835F.ttl
Removing orphan data/AB/7C/C7/AB7CC720FFD6FFFDFF1DA379FD9AF86D.ttl
Removing orphan data/7C/09/9D/7C099D78FC604051F500FAF816F2F894.ttl
Removing orphan data/A2/52/5A/A2525A2AFFD6FA63FF5841E7FBB1FB04.ttl
Removing orphan data/6B/77/85/6B7785212A54FFD928CAC1E7FE69F8E9.ttl
Removing orphan data/4F/73/A7/4F73A776FA555160FF32FF17FC4F6771.ttl
Removing orphan data/B8/37/B3/B837B35FA672FFADFDBDFD95DF0CB547.ttl
Removing orphan data/C0/0D/87/C00D879EFFA153352342FCAC88FFF84D.ttl
Removing orphan data/03/D2/94/03D29445A2344C2EFF39FD9408086EBE.ttl
Removing orphan data/03/B7/87/03B787D7FFEFB425FF53FF3ED4D5FE58.ttl
Removing orphan data/03/B7/87/03B787D7FFF4B427FF53FA32D4D5F8F8.ttl
Removing orphan data/03/B7/87/03B787D7FFECB422FF53FD10D4D2FB13.ttl
Removing orphan data/03/CC/3D/03CC3D3A164B956A038C1AABFBDCFECF.ttl
Removing orphan data/03/C2/B1/03C2B155E559FFA989E2FBB0FCCAFBDF.ttl
Removing orphan data/03/B2/C3/03B2C35C3038FFCCFF46FE8EFC65FEA3.ttl
Removing orphan data/03/B2/C3/03B2C35C3038FFCCFD63FEAAFA34FEFF.ttl
Removing orphan data/03/BD/6C/03BD6C1BBD43FFB5FCFA1BBBFE68FA37.ttl
Removing orphan data/03/BD/6C/03BD6C1BBD43FFB5FF421D1AFCA7F837.ttl
Removing orphan data/03/D0/87/03D087F6FF99FFDBFF1AFE8ABF2A4DA2.ttl
Removing orphan data/03/8D/87/038D8795A274FF94FF00B966450EF9A8.ttl
Removing orphan data/03/8D/87/038D8795A274FF94FF00BF7A45CBFC20.ttl
Removing orphan data/03/8D/87/038D8795A276FF96FF00B81445E7FB15.ttl
Removing orphan data/03/8D/87/038D8795A274FF94FF00B806452AFB27.ttl
Removing orphan data/03/8D/87/038D8795A277FF94FF00B9BA4460FC90.ttl
Removing orphan data/03/8D/87/038D8795A276FF96FF00B9AC45FAF89D.ttl
Removing orphan data/03/8D/87/038D8795A276FF96FF00B8844583FAED.ttl
Removing orphan data/03/8D/87/038D8795A277FF97FF00BD1E45A9FE70.ttl
Removing orphan data/03/8D/87/038D8795A277FF97FF00BE8A458DFAD0.ttl
Removing orphan data/03/8D/87/038D8795A276FF97FF00BB88447AFF7C.ttl
Removing orphan data/03/8D/87/038D8795A274FF94FF00B8F64590FAB4.ttl
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Removing orphan data/03/E9/FF/03E9FF6AFFF4FFEEFF730883F0B2A793.ttl
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Removing orphan data/03/E9/87/03E987A8FFC8C64FFC2EADC2D161EC15.ttl
Removing orphan data/03/E9/87/03E987A8FFCAC64DFC3BABC4D72CE986.ttl
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Removing orphan data/03/96/87/03968780FFAFAF4FFF0AFE267EAAFBD0.ttl
Removing orphan data/03/96/87/03968780FFB2AF5BFF0AFD977E1FFD90.ttl
Removing orphan data/03/96/87/03968780FFABAF43FF0AF9EE7E64FA6C.ttl
Removing orphan data/03/96/87/03968780FFC6AF17FF0AF9EE7FDAFF54.ttl
Removing orphan data/03/99/87/039987E2FFF7D476A833FF6BFCBCF837.ttl
Removing orphan data/03/92/87/03928792D66B296FFF587D6BFEEDFC09.ttl
Removing orphan data/03/92/87/03928792D6602964FF587FCBFD56FE49.ttl
Removing orphan data/03/92/87/03928792D66C2968FF587C4BFD0FFDE9.ttl
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Removing orphan data/03/DD/87/03DD879BCF47FFA5FF6AEA1DFA3BF80E.ttl
Removing orphan data/03/AE/87/03AE87CA2D631531FF26AD5AFEA64DDD.ttl
Removing orphan data/03/F6/87/03F6879B7854F62CFF79F9D719CF38B8.ttl
Removing orphan data/03/C7/19/03C71929D301FF8997B013635352E1AF.ttl
Removing orphan data/03/C7/19/03C71929D30AFF8097B010D75309E1EB.ttl
Removing orphan data/03/C7/19/03C71929D308FF8197B017C25349E59F.ttl
Removing orphan data/03/C7/19/03C71929D30BFF8297B015E65367E3F3.ttl
Removing orphan data/03/C0/87/03C087FA104B60027E85D75B1761F9E3.ttl
Removing orphan data/03/F0/29/03F029281E69FFF9FF2150DEFA46FA5A.ttl
Removing orphan data/03/F0/29/03F029281E68FFFDFF2152E2FEA3FE81.ttl
Removing orphan data/03/B1/87/03B187DCFFDFFF80FF497F0671DFFCE5.ttl
Removing orphan data/03/FC/97/03FC9766FFE0D662FEB5FD06FA187CDC.ttl
Removing orphan data/03/BC/A6/03BCA619FFCAD831977DFADFFAFFFCFB.ttl
Removing orphan data/03/B5/87/03B5878FFF85FF85FDD0FE91FECA1686.ttl
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Removing orphan data/03/B5/87/03B5878FFFAEFFAFFD9AF9B4FEE3175B.ttl
Removing orphan data/03/B5/87/03B5878FFF93FF93FDEFFAE0FED212E6.ttl
Removing orphan data/03/B5/87/03B5878FFFA3FFA0FE7AFE17FEE31453.ttl
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Removing orphan data/03/BF/24/03BF244D954AFFB133D725B6FD0CFCB1.ttl
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Removing orphan data/03/97/87/039787D7561DFF9D1BE1FA9111AA28D7.ttl
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Removing orphan data/03/BA/87/03BA87CCFFBE67442AB8EDD1DBB194FC.ttl
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Removing orphan data/03/BA/87/03BA87CCFF8A67772AB8EB94D8FC96B4.ttl
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Removing orphan data/03/ED/D0/03EDD027FFACC862742362A5FD59E5DD.ttl
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Removing orphan data/03/D3/47/03D34720FFCE1856FF21AC29BF4EFDC9.ttl
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Removing orphan data/6D/73/87/6D73878BFF8BFFA69DBFAD2AECD1FA04.ttl
Removing orphan data/6D/73/87/6D73878BFF8DFFA49DBFAF5FEED5FCCC.ttl
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Removing orphan data/55/31/87/553187B2C486FF1162F6FD00FD959E3E.ttl
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Removing orphan data/CB/76/99/CB769940FFD8FF8EFDE039F2FCCCFD1C.ttl
Removing orphan data/3A/6F/87/3A6F87C516612E25FED9FDC4131DF857.ttl
Removing orphan data/A1/66/87/A166879C1B02FF81D303C7B6FD54FAA3.ttl
Removing orphan data/D3/09/87/D30987BD1C60B678FF63FA77FE54F94A.ttl
Removing orphan data/9C/19/87/9C19879A5A314E36FF246A0DFA1BF94B.ttl
Removing orphan data/9C/19/87/9C19879A5A314E36FF246CA7FEBAFA9D.ttl
Removing orphan data/01/29/16/0129163AB1286017FCCAFF06FA16FCC0.ttl
Removing orphan data/5B/5A/87/5B5A87B7FFC6FFC2B0C9F9A7B88EF985.ttl
Removing orphan data/5B/5A/87/5B5A87B7FFC6FFC2B0C2FA07B88EF985.ttl
Removing orphan data/B3/6A/B0/B36AB07A211EFF878BEC1D31FDB7707B.ttl
== git commit ==
OUT> [main 5cce5bc37d85] GG2RDF prune 266 orphaned ttl files (plazi/treatments-xml full update 2026-10-20T19:20:57.412Z)
OUT>  266 files changed, 32369 deletions(-)
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== git push ==
git push successful
Completed transformation successfully
=== Sucessfully completed job 2026-10-20T19:20:57.412Z full update: 302 of 302 ===